Bayesian nonparametric mixture inconsistency for the number of components: How worried should we be in practice?
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We consider the Bayesian mixture of finite mixtures (MFMs) and Dirichlet process mixture (DPM) models for clustering. Recent asymptotic theory has established that DPMs overestimate the number of clusters for large samples and that estimators from both classes of models are inconsistent for the number of clusters under misspecification, but the implications for finite sample analyses are unclear. The final reported estimate after fitting these models is often a single representative clustering obtained using an MCMC summarisation technique, but it is unknown how well such a summary estimates the number of clusters. Here we investigate these practical considerations through simulations and an application to gene expression data, and find that (i) DPMs overestimate the number of clusters even in finite samples, but only to a limited degree that may be correctable using appropriate summaries, and (ii) misspecification can lead to considerable overestimation of the number of clusters in both DPMs and MFMs, but results are nevertheless often still interpretable. We provide recommendations on MCMC summarisation and suggest that although the more appealing asymptotic properties of MFMs provide strong motivation to prefer them, results obtained using MFMs and DPMs are often very similar in practice.
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