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07/24/2023
Making Metadata More FAIR Using Large Language Models
With the global increase in experimental data artifacts, harnessing them...
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08/04/2022
Modeling community standards for metadata as templates makes data FAIR
It is challenging to determine whether datasets are findable, accessible...
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05/15/2021
Using Ethnographic Methods to Classify the Human Experience in Medicine: A Case Study of the Presence Ontology
Objective Although social and environmental factors are central to provi...
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07/28/2020
Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies
The National Institutes of Health's (NIH) Human Biomolecular Atlas Progr...
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06/07/2020
An Empirical Meta-analysis of the Life Sciences (Linked?) Open Data on the Web
While the biomedical community has published several "open data" sources...
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07/03/2019
Use of OWL and Semantic Web Technologies at Pinterest
Pinterest is a popular Web application that has over 250 million active ...
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05/16/2019
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments
The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to re...
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03/21/2019
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases
Metadata-the machine-readable descriptions of the data-are increasingly ...
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03/19/2019
Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings
The metadata about scientific experiments published in online repositori...
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02/21/2019
WebProtégé: A Cloud-Based Ontology Editor
We present the WebProtégé application to develop ontologies represented ...
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08/17/2018
The Variable Quality of Metadata About Biological Samples Used in Biomedical Experiments
We present an analytical study of the quality of metadata about samples ...
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08/03/2017
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies
The metadata about scientific experiments are crucial for finding, repro...
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11/18/2016
NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation
Biomedical researchers use ontologies to annotate their data with ontolo...
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07/08/2014
Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains
Biomedical taxonomies, thesauri and ontologies in the form of the Intern...
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03/06/2013